PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g011740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 339aa    MW: 38700.1 Da    PI: 8.8722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g011740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05181200120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  Csa03g011740.1 181 FACSICSKTFNRYNNMQMHM 200
                     78*****************9 PP

2zf-C2H210.90.0014266288123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cgk    k + ++H +++
  Csa03g011740.1 266 FSCGKCGKALAVKGDWRTHEKNC 288
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-8160204No hitNo description
PROSITE profilePS5015710.45181208IPR007087Zinc finger, C2H2
SMARTSM003550.17181203IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5181200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM00355170229261IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.04E-5251286No hitNo description
Gene3DG3DSA:3.30.160.609.3E-4252286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190266286IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSLMNPYEKG LSFESPSFIE WLKPPSSPSV LYRMKTRDAI SRSNHHQSKM NMLERSLCLY  60
QPREPLNTSI QCLPLLNKLM ENKSRQALDE IKEETKDDVV TLQIGFPNYH RGNSPGDDSD  120
TTSDHQKKPI KREIIDDGVV MMKKRRKMKY DDEVIDSDTE VCGQRFWIPS PAQIHVGPMQ  180
FACSICSKTF NRYNNMQMHM WGHGSEFRKG ADSLKGTTQP AAILRLPCYC CAEGCKNNIN  240
HPRSKPLKDF RTLQTHYKRK HGSKPFSCGK CGKALAVKGD WRTHEKNCGK LWYCTCGSDF  300
KHKRSLKDHI RSFGSGHAPH PSVSFDGFEE DTECVTTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488679.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLR0II760.0R0II76_9BRAS; Uncharacterized protein
STRINGAT1G08290.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3